Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.
Identifieur interne : 002A67 ( Main/Exploration ); précédent : 002A66; suivant : 002A68Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.
Auteurs : Gancho T. Slavov [États-Unis] ; Stephen P. Difazio ; Joel Martin ; Wendy Schackwitz ; Wellington Muchero ; Eli Rodgers-Melnick ; Mindie F. Lipphardt ; Christa P. Pennacchio ; Uffe Hellsten ; Len A. Pennacchio ; Lee E. Gunter ; Priya Ranjan ; Kelly Vining ; Kyle R. Pomraning ; Larry J. Wilhelm ; Matteo Pellegrini ; Todd C. Mockler ; Michael Freitag ; Armando Geraldes ; Yousry A. El-Kassaby ; Shawn D. Mansfield ; Quentin C B. Cronk ; Carl J. Douglas ; Steven H. Strauss ; Dan Rokhsar ; Gerald A. TuskanSource :
- The New phytologist [ 1469-8137 ] ; 2012.
Descripteurs français
- KwdFr :
- ADN des plantes (génétique), Analyse de séquence d'ADN (méthodes), Analyse en composantes principales (MeSH), Dérive génétique (MeSH), Déséquilibre de liaison (MeSH), Fréquence d'allèle (MeSH), Génome végétal (MeSH), Génomique (méthodes), Géographie (MeSH), Méthylation de l'ADN (MeSH), Polymorphisme de nucléotide simple (MeSH), Populus (génétique), Recombinaison génétique (MeSH), Sensibilité et spécificité (MeSH), Sélection génétique (MeSH), Techniques de génotypage (MeSH), Études d'associations génétiques (méthodes), Évolution moléculaire (MeSH).
- MESH :
- génétique : ADN des plantes, Populus.
- méthodes : Analyse de séquence d'ADN, Génomique, Études d'associations génétiques.
- Analyse en composantes principales, Dérive génétique, Déséquilibre de liaison, Fréquence d'allèle, Génome végétal, Géographie, Méthylation de l'ADN, Polymorphisme de nucléotide simple, Recombinaison génétique, Sensibilité et spécificité, Sélection génétique, Techniques de génotypage, Évolution moléculaire.
English descriptors
- KwdEn :
- DNA Methylation (MeSH), DNA, Plant (genetics), Evolution, Molecular (MeSH), Gene Frequency (MeSH), Genetic Association Studies (methods), Genetic Drift (MeSH), Genome, Plant (MeSH), Genomics (methods), Genotyping Techniques (MeSH), Geography (MeSH), Linkage Disequilibrium (MeSH), Polymorphism, Single Nucleotide (MeSH), Populus (genetics), Principal Component Analysis (MeSH), Recombination, Genetic (MeSH), Selection, Genetic (MeSH), Sensitivity and Specificity (MeSH), Sequence Analysis, DNA (methods).
- MESH :
- chemical , genetics : DNA, Plant.
- genetics : Populus.
- methods : Genetic Association Studies, Genomics, Sequence Analysis, DNA.
- DNA Methylation, Evolution, Molecular, Gene Frequency, Genetic Drift, Genome, Plant, Genotyping Techniques, Geography, Linkage Disequilibrium, Polymorphism, Single Nucleotide, Principal Component Analysis, Recombination, Genetic, Selection, Genetic, Sensitivity and Specificity.
Abstract
• Plant population genomics informs evolutionary biology, breeding, conservation and bioenergy feedstock development. For example, the detection of reliable phenotype-genotype associations and molecular signatures of selection requires a detailed knowledge about genome-wide patterns of allele frequency variation, linkage disequilibrium and recombination. • We resequenced 16 genomes of the model tree Populus trichocarpa and genotyped 120 trees from 10 subpopulations using 29,213 single-nucleotide polymorphisms. • Significant geographic differentiation was present at multiple spatial scales, and range-wide latitudinal allele frequency gradients were strikingly common across the genome. The decay of linkage disequilibrium with physical distance was slower than expected from previous studies in Populus, with r(2) dropping below 0.2 within 3-6 kb. Consistent with this, estimates of recent effective population size from linkage disequilibrium (N(e) ≈ 4000-6000) were remarkably low relative to the large census sizes of P. trichocarpa stands. Fine-scale rates of recombination varied widely across the genome, but were largely predictable on the basis of DNA sequence and methylation features. • Our results suggest that genetic drift has played a significant role in the recent evolutionary history of P. trichocarpa. Most importantly, the extensive linkage disequilibrium detected suggests that genome-wide association studies and genomic selection in undomesticated populations may be more feasible in Populus than previously assumed.
DOI: 10.1111/j.1469-8137.2012.04258.x
PubMed: 22861491
Affiliations:
Links toward previous steps (curation, corpus...)
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Tuskan</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22861491</idno><idno type="pmid">22861491</idno><idno type="doi">10.1111/j.1469-8137.2012.04258.x</idno><idno type="wicri:Area/Main/Corpus">002940</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002940</idno><idno type="wicri:Area/Main/Curation">002940</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002940</idno><idno type="wicri:Area/Main/Exploration">002940</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.</title><author><name sortKey="Slavov, Gancho T" sort="Slavov, Gancho T" uniqKey="Slavov G" first="Gancho T" last="Slavov">Gancho T. Slavov</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, West Virginia University, Morgantown, WV 26506-6057, USA. gts@aber.ac.uk</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, West Virginia University, Morgantown, WV 26506-6057</wicri:regionArea><placeName><region type="state">Virginie-Occidentale</region></placeName></affiliation></author><author><name sortKey="Difazio, Stephen P" sort="Difazio, Stephen P" uniqKey="Difazio S" first="Stephen P" last="Difazio">Stephen P. Difazio</name></author><author><name sortKey="Martin, Joel" sort="Martin, Joel" uniqKey="Martin J" first="Joel" last="Martin">Joel Martin</name></author><author><name sortKey="Schackwitz, Wendy" sort="Schackwitz, Wendy" uniqKey="Schackwitz W" first="Wendy" last="Schackwitz">Wendy Schackwitz</name></author><author><name sortKey="Muchero, Wellington" sort="Muchero, Wellington" uniqKey="Muchero W" first="Wellington" last="Muchero">Wellington Muchero</name></author><author><name sortKey="Rodgers Melnick, Eli" sort="Rodgers Melnick, Eli" uniqKey="Rodgers Melnick E" first="Eli" last="Rodgers-Melnick">Eli Rodgers-Melnick</name></author><author><name sortKey="Lipphardt, Mindie F" sort="Lipphardt, Mindie F" uniqKey="Lipphardt M" first="Mindie F" last="Lipphardt">Mindie F. Lipphardt</name></author><author><name sortKey="Pennacchio, Christa P" sort="Pennacchio, Christa P" uniqKey="Pennacchio C" first="Christa P" last="Pennacchio">Christa P. Pennacchio</name></author><author><name sortKey="Hellsten, Uffe" sort="Hellsten, Uffe" uniqKey="Hellsten U" first="Uffe" last="Hellsten">Uffe Hellsten</name></author><author><name sortKey="Pennacchio, Len A" sort="Pennacchio, Len A" uniqKey="Pennacchio L" first="Len A" last="Pennacchio">Len A. Pennacchio</name></author><author><name sortKey="Gunter, Lee E" sort="Gunter, Lee E" uniqKey="Gunter L" first="Lee E" last="Gunter">Lee E. Gunter</name></author><author><name sortKey="Ranjan, Priya" sort="Ranjan, Priya" uniqKey="Ranjan P" first="Priya" last="Ranjan">Priya Ranjan</name></author><author><name sortKey="Vining, Kelly" sort="Vining, Kelly" uniqKey="Vining K" first="Kelly" last="Vining">Kelly Vining</name></author><author><name sortKey="Pomraning, Kyle R" sort="Pomraning, Kyle R" uniqKey="Pomraning K" first="Kyle R" last="Pomraning">Kyle R. Pomraning</name></author><author><name sortKey="Wilhelm, Larry J" sort="Wilhelm, Larry J" uniqKey="Wilhelm L" first="Larry J" last="Wilhelm">Larry J. Wilhelm</name></author><author><name sortKey="Pellegrini, Matteo" sort="Pellegrini, Matteo" uniqKey="Pellegrini M" first="Matteo" last="Pellegrini">Matteo Pellegrini</name></author><author><name sortKey="Mockler, Todd C" sort="Mockler, Todd C" uniqKey="Mockler T" first="Todd C" last="Mockler">Todd C. Mockler</name></author><author><name sortKey="Freitag, Michael" sort="Freitag, Michael" uniqKey="Freitag M" first="Michael" last="Freitag">Michael Freitag</name></author><author><name sortKey="Geraldes, Armando" sort="Geraldes, Armando" uniqKey="Geraldes A" first="Armando" last="Geraldes">Armando Geraldes</name></author><author><name sortKey="El Kassaby, Yousry A" sort="El Kassaby, Yousry A" uniqKey="El Kassaby Y" first="Yousry A" last="El-Kassaby">Yousry A. El-Kassaby</name></author><author><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name></author><author><name sortKey="Cronk, Quentin C B" sort="Cronk, Quentin C B" uniqKey="Cronk Q" first="Quentin C B" last="Cronk">Quentin C B. Cronk</name></author><author><name sortKey="Douglas, Carl J" sort="Douglas, Carl J" uniqKey="Douglas C" first="Carl J" last="Douglas">Carl J. Douglas</name></author><author><name sortKey="Strauss, Steven H" sort="Strauss, Steven H" uniqKey="Strauss S" first="Steven H" last="Strauss">Steven H. Strauss</name></author><author><name sortKey="Rokhsar, Dan" sort="Rokhsar, Dan" uniqKey="Rokhsar D" first="Dan" last="Rokhsar">Dan Rokhsar</name></author><author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA Methylation (MeSH)</term><term>DNA, Plant (genetics)</term><term>Evolution, Molecular (MeSH)</term><term>Gene Frequency (MeSH)</term><term>Genetic Association Studies (methods)</term><term>Genetic Drift (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Genomics (methods)</term><term>Genotyping Techniques (MeSH)</term><term>Geography (MeSH)</term><term>Linkage Disequilibrium (MeSH)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Populus (genetics)</term><term>Principal Component Analysis (MeSH)</term><term>Recombination, Genetic (MeSH)</term><term>Selection, Genetic (MeSH)</term><term>Sensitivity and Specificity (MeSH)</term><term>Sequence Analysis, DNA (methods)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term><term>Analyse de séquence d'ADN (méthodes)</term><term>Analyse en composantes principales (MeSH)</term><term>Dérive génétique (MeSH)</term><term>Déséquilibre de liaison (MeSH)</term><term>Fréquence d'allèle (MeSH)</term><term>Génome végétal (MeSH)</term><term>Génomique (méthodes)</term><term>Géographie (MeSH)</term><term>Méthylation de l'ADN (MeSH)</term><term>Polymorphisme de nucléotide simple (MeSH)</term><term>Populus (génétique)</term><term>Recombinaison génétique (MeSH)</term><term>Sensibilité et spécificité (MeSH)</term><term>Sélection génétique (MeSH)</term><term>Techniques de génotypage (MeSH)</term><term>Études d'associations génétiques (méthodes)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genetic Association Studies</term><term>Genomics</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Génomique</term><term>Études d'associations génétiques</term></keywords><keywords scheme="MESH" xml:lang="en"><term>DNA Methylation</term><term>Evolution, Molecular</term><term>Gene Frequency</term><term>Genetic Drift</term><term>Genome, Plant</term><term>Genotyping Techniques</term><term>Geography</term><term>Linkage Disequilibrium</term><term>Polymorphism, Single Nucleotide</term><term>Principal Component Analysis</term><term>Recombination, Genetic</term><term>Selection, Genetic</term><term>Sensitivity and Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse en composantes principales</term><term>Dérive génétique</term><term>Déséquilibre de liaison</term><term>Fréquence d'allèle</term><term>Génome végétal</term><term>Géographie</term><term>Méthylation de l'ADN</term><term>Polymorphisme de nucléotide simple</term><term>Recombinaison génétique</term><term>Sensibilité et spécificité</term><term>Sélection génétique</term><term>Techniques de génotypage</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">• Plant population genomics informs evolutionary biology, breeding, conservation and bioenergy feedstock development. For example, the detection of reliable phenotype-genotype associations and molecular signatures of selection requires a detailed knowledge about genome-wide patterns of allele frequency variation, linkage disequilibrium and recombination. • We resequenced 16 genomes of the model tree Populus trichocarpa and genotyped 120 trees from 10 subpopulations using 29,213 single-nucleotide polymorphisms. • Significant geographic differentiation was present at multiple spatial scales, and range-wide latitudinal allele frequency gradients were strikingly common across the genome. The decay of linkage disequilibrium with physical distance was slower than expected from previous studies in Populus, with r(2) dropping below 0.2 within 3-6 kb. Consistent with this, estimates of recent effective population size from linkage disequilibrium (N(e) ≈ 4000-6000) were remarkably low relative to the large census sizes of P. trichocarpa stands. Fine-scale rates of recombination varied widely across the genome, but were largely predictable on the basis of DNA sequence and methylation features. • Our results suggest that genetic drift has played a significant role in the recent evolutionary history of P. trichocarpa. Most importantly, the extensive linkage disequilibrium detected suggests that genome-wide association studies and genomic selection in undomesticated populations may be more feasible in Populus than previously assumed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22861491</PMID><DateCompleted><Year>2013</Year><Month>03</Month><Day>08</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>196</Volume><Issue>3</Issue><PubDate><Year>2012</Year><Month>Nov</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.</ArticleTitle><Pagination><MedlinePgn>713-25</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/j.1469-8137.2012.04258.x</ELocationID><Abstract><AbstractText>• Plant population genomics informs evolutionary biology, breeding, conservation and bioenergy feedstock development. For example, the detection of reliable phenotype-genotype associations and molecular signatures of selection requires a detailed knowledge about genome-wide patterns of allele frequency variation, linkage disequilibrium and recombination. • We resequenced 16 genomes of the model tree Populus trichocarpa and genotyped 120 trees from 10 subpopulations using 29,213 single-nucleotide polymorphisms. • Significant geographic differentiation was present at multiple spatial scales, and range-wide latitudinal allele frequency gradients were strikingly common across the genome. The decay of linkage disequilibrium with physical distance was slower than expected from previous studies in Populus, with r(2) dropping below 0.2 within 3-6 kb. Consistent with this, estimates of recent effective population size from linkage disequilibrium (N(e) ≈ 4000-6000) were remarkably low relative to the large census sizes of P. trichocarpa stands. Fine-scale rates of recombination varied widely across the genome, but were largely predictable on the basis of DNA sequence and methylation features. • Our results suggest that genetic drift has played a significant role in the recent evolutionary history of P. trichocarpa. Most importantly, the extensive linkage disequilibrium detected suggests that genome-wide association studies and genomic selection in undomesticated populations may be more feasible in Populus than previously assumed.</AbstractText><CopyrightInformation>© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Slavov</LastName><ForeName>Gancho T</ForeName><Initials>GT</Initials><AffiliationInfo><Affiliation>Department of Biology, West Virginia University, Morgantown, WV 26506-6057, USA. gts@aber.ac.uk</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>DiFazio</LastName><ForeName>Stephen P</ForeName><Initials>SP</Initials></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Joel</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Schackwitz</LastName><ForeName>Wendy</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Muchero</LastName><ForeName>Wellington</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Rodgers-Melnick</LastName><ForeName>Eli</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Lipphardt</LastName><ForeName>Mindie F</ForeName><Initials>MF</Initials></Author><Author ValidYN="Y"><LastName>Pennacchio</LastName><ForeName>Christa P</ForeName><Initials>CP</Initials></Author><Author ValidYN="Y"><LastName>Hellsten</LastName><ForeName>Uffe</ForeName><Initials>U</Initials></Author><Author ValidYN="Y"><LastName>Pennacchio</LastName><ForeName>Len A</ForeName><Initials>LA</Initials></Author><Author ValidYN="Y"><LastName>Gunter</LastName><ForeName>Lee E</ForeName><Initials>LE</Initials></Author><Author ValidYN="Y"><LastName>Ranjan</LastName><ForeName>Priya</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Vining</LastName><ForeName>Kelly</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Pomraning</LastName><ForeName>Kyle R</ForeName><Initials>KR</Initials></Author><Author ValidYN="Y"><LastName>Wilhelm</LastName><ForeName>Larry J</ForeName><Initials>LJ</Initials></Author><Author ValidYN="Y"><LastName>Pellegrini</LastName><ForeName>Matteo</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Mockler</LastName><ForeName>Todd C</ForeName><Initials>TC</Initials></Author><Author ValidYN="Y"><LastName>Freitag</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Geraldes</LastName><ForeName>Armando</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>El-Kassaby</LastName><ForeName>Yousry A</ForeName><Initials>YA</Initials></Author><Author ValidYN="Y"><LastName>Mansfield</LastName><ForeName>Shawn D</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>Cronk</LastName><ForeName>Quentin C B</ForeName><Initials>QC</Initials></Author><Author ValidYN="Y"><LastName>Douglas</LastName><ForeName>Carl J</ForeName><Initials>CJ</Initials></Author><Author ValidYN="Y"><LastName>Strauss</LastName><ForeName>Steven H</ForeName><Initials>SH</Initials></Author><Author ValidYN="Y"><LastName>Rokhsar</LastName><ForeName>Dan</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald A</ForeName><Initials>GA</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>08</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="CommentIn"><RefSource>New Phytol. 2012 Nov;196(3):652-4</RefSource><PMID Version="1">23043586</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D019175" MajorTopicYN="N">DNA Methylation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005787" MajorTopicYN="N">Gene Frequency</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D056726" MajorTopicYN="N">Genetic Association Studies</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040961" MajorTopicYN="N">Genetic Drift</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060005" MajorTopicYN="N">Genotyping Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005843" MajorTopicYN="N">Geography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015810" MajorTopicYN="Y">Linkage Disequilibrium</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D025341" MajorTopicYN="N">Principal Component Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011995" MajorTopicYN="N">Recombination, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012641" MajorTopicYN="N">Selection, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012680" MajorTopicYN="N">Sensitivity and Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>8</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>8</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2013</Year><Month>3</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22861491</ArticleId><ArticleId IdType="doi">10.1111/j.1469-8137.2012.04258.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Virginie-Occidentale</li></region></list><tree><noCountry><name sortKey="Cronk, Quentin C B" sort="Cronk, Quentin C B" uniqKey="Cronk Q" first="Quentin C B" last="Cronk">Quentin C B. Cronk</name><name sortKey="Difazio, Stephen P" sort="Difazio, Stephen P" uniqKey="Difazio S" first="Stephen P" last="Difazio">Stephen P. Difazio</name><name sortKey="Douglas, Carl J" sort="Douglas, Carl J" uniqKey="Douglas C" first="Carl J" last="Douglas">Carl J. Douglas</name><name sortKey="El Kassaby, Yousry A" sort="El Kassaby, Yousry A" uniqKey="El Kassaby Y" first="Yousry A" last="El-Kassaby">Yousry A. El-Kassaby</name><name sortKey="Freitag, Michael" sort="Freitag, Michael" uniqKey="Freitag M" first="Michael" last="Freitag">Michael Freitag</name><name sortKey="Geraldes, Armando" sort="Geraldes, Armando" uniqKey="Geraldes A" first="Armando" last="Geraldes">Armando Geraldes</name><name sortKey="Gunter, Lee E" sort="Gunter, Lee E" uniqKey="Gunter L" first="Lee E" last="Gunter">Lee E. Gunter</name><name sortKey="Hellsten, Uffe" sort="Hellsten, Uffe" uniqKey="Hellsten U" first="Uffe" last="Hellsten">Uffe Hellsten</name><name sortKey="Lipphardt, Mindie F" sort="Lipphardt, Mindie F" uniqKey="Lipphardt M" first="Mindie F" last="Lipphardt">Mindie F. Lipphardt</name><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name><name sortKey="Martin, Joel" sort="Martin, Joel" uniqKey="Martin J" first="Joel" last="Martin">Joel Martin</name><name sortKey="Mockler, Todd C" sort="Mockler, Todd C" uniqKey="Mockler T" first="Todd C" last="Mockler">Todd C. Mockler</name><name sortKey="Muchero, Wellington" sort="Muchero, Wellington" uniqKey="Muchero W" first="Wellington" last="Muchero">Wellington Muchero</name><name sortKey="Pellegrini, Matteo" sort="Pellegrini, Matteo" uniqKey="Pellegrini M" first="Matteo" last="Pellegrini">Matteo Pellegrini</name><name sortKey="Pennacchio, Christa P" sort="Pennacchio, Christa P" uniqKey="Pennacchio C" first="Christa P" last="Pennacchio">Christa P. Pennacchio</name><name sortKey="Pennacchio, Len A" sort="Pennacchio, Len A" uniqKey="Pennacchio L" first="Len A" last="Pennacchio">Len A. Pennacchio</name><name sortKey="Pomraning, Kyle R" sort="Pomraning, Kyle R" uniqKey="Pomraning K" first="Kyle R" last="Pomraning">Kyle R. Pomraning</name><name sortKey="Ranjan, Priya" sort="Ranjan, Priya" uniqKey="Ranjan P" first="Priya" last="Ranjan">Priya Ranjan</name><name sortKey="Rodgers Melnick, Eli" sort="Rodgers Melnick, Eli" uniqKey="Rodgers Melnick E" first="Eli" last="Rodgers-Melnick">Eli Rodgers-Melnick</name><name sortKey="Rokhsar, Dan" sort="Rokhsar, Dan" uniqKey="Rokhsar D" first="Dan" last="Rokhsar">Dan Rokhsar</name><name sortKey="Schackwitz, Wendy" sort="Schackwitz, Wendy" uniqKey="Schackwitz W" first="Wendy" last="Schackwitz">Wendy Schackwitz</name><name sortKey="Strauss, Steven H" sort="Strauss, Steven H" uniqKey="Strauss S" first="Steven H" last="Strauss">Steven H. Strauss</name><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name><name sortKey="Vining, Kelly" sort="Vining, Kelly" uniqKey="Vining K" first="Kelly" last="Vining">Kelly Vining</name><name sortKey="Wilhelm, Larry J" sort="Wilhelm, Larry J" uniqKey="Wilhelm L" first="Larry J" last="Wilhelm">Larry J. Wilhelm</name></noCountry><country name="États-Unis"><region name="Virginie-Occidentale"><name sortKey="Slavov, Gancho T" sort="Slavov, Gancho T" uniqKey="Slavov G" first="Gancho T" last="Slavov">Gancho T. Slavov</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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